People at CBCB

Faculty

Mihai Pop, Ph.D.
Associate Professor, Computer Science
Interim Director, Center for Bioinformatics and Computational Biology
Genome assembly, environmental sequencing

Office: 3120F Biomolecular Sciences Bldg.
Phone: 301-405-7245
mpop [at] umiacs.umd.edu
Home page

Rita Colwell, Ph.D.
Distinguished Professor, University of Maryland
Distinguished Professor, Johns Hopkins School of Public Health
Chairman, Canon US Life Sciences, Inc.

Office: 3103 Biomolecular Sciences Bldg
rcolwell [at] umiacs.umd.edu
Home page

Héctor Corrada Bravo, Ph.D.
Assistant Professor , Computer Science
Statistical and computational methods for high-throughput genomics

Office: 3114F Biomolecular Sciences Bldg
hcorrada [at] umiacs.umd.edu
Home page

Michael Cummings, Ph.D.
Associate Professor, Biology
Molecular evolution, the relationship of genotype to phenotype, grid computing

Office: 3121 Biomolecular Sciences Bldg
Phone: 301-405-9903
mike [at] umiacs.umd.edu
Home page

Najib M. El-Sayed, Ph.D.
Associate Professor, CBMG

Office: 3115 Biomolecular Sciences Bldg.
Phone: 301-405-5960
Homepage

Sridhar Hannenhalli, Ph.D.
Associate Professor, CBMG
Gene regulation, Molecular evolution

Office: 3104G Biomolecular Sciences Bldg.
Phone: 301-405-8219
sridhar [at] umiacs.umd.edu
Home page

Carl Kingsford, Ph.D.
Assistant Professor, Computer Science
Protein structure, protein networks, bacterial genome organization, influenza virus

Office: 3120B Biomolecular Sciences Bldg
Phone: 301-405-7395
carlk [at] umiacs.umd.edu
Home page

Stephen M. Mount, Ph.D.
Associate Director, Center for Bioinformatics and Computational Biology
Associate Professor, Cell Biology and Molecular Genetics
Splice site selection in eukaryotes; genetics of Drosophila and Arabidopsis

Office: 3117 Biomolecular Sciences Bldg
Phone: 301-405-6934
smount [at] umiacs.umd.edu
Home page

Steven L. Salzberg, Ph.D.
Horvitz Professor of Computer Science [On leave of absence effective July 2011]
Genome assembly, gene finding, genomics, next-generation sequence analysis

Office: BRB 459, Johns Hopkins School of Medicine
Phone: 410-614-6112
salzberg [at] jhu.edu
Home Page

Affiliated Faculty

Cristian I. Castillo-Davis, Ph.D.
Assistant Professor, Department of Biology
Molecular genetic basis of morphological evolution and the analysis of genomic data in a statistical and experimental framework.

Office: Biology-Psychology Bldg., Rm. 3220  
Phone: (301) 405-2005
castill0 [at] umd.edu
Homepage

Avis Cohen, Ph.D.
Professor, Department of Biology

Office: Biology/Psychology Building
Phone: 301.405.0069
Fax: 301.314.5683
avis [at] isrmail.isr.umd.edu
Homepage

Charles F. Delwiche
Professor, Cell Biology and Molecular Genetics
Plant molecular systematics, systematics in the green algal class Charophyceae, evolution of plastids in dinoflagellates.

Office: 2108 Biosciences Research
University of Maryland Bldg. #413
Phone:301-405-8286
delwiche [at] umd.edu
Lab Page
Homepage


Nathan Edwards, Ph.D.
Assistant Professor, Dept. of Biochemistry, Georgetown University
Proteomics, haplotype phasing, comparative genomics, sequence assembly, and PCR primer design

Office: Georgetown University
Georgetown homepage
nje5 [at] georgetown.edu
Home page at CBCB

Lise Getoor, Ph.D.
Assistant Professor, Computer Science
Machine learning, data mining, artificial intelligence.

Office: 3217 A.V. Williams
Phone: 301-405-2691
getoor [at] cs.umd.edu
Home page

Tom Kocher, Ph.D.
Professor, Department of Biology

Office: 3104E Biomolecular Sciences Bldg.
Phone: 301-405-6929
tdk [at] umd.edu
Homepage


Dianne P. O'Leary, Ph.D.
Professor, Computer Science and UMIACS
Numerical analysis, scientific computing, parallel numeric algorithms

Office: 3271 A.V. Williams
Phone: 301-405-2678
oleary [at] cs.umd.edu
Home page

 

Louiqa Raschid, Ph.D.
Professor, Smith School of Business, UMIACS, and Computer Science
Wide area data delivery, data management for the life sciences, grid data management.

Phone: 301-405-6747
louiqa [at] cs.umd.edu
Home page

James Reggia, M.D., Ph.D.
Professor, Computer Science and UMIACS; Joint appointment, Dept of Neurology, UM School of Medicine
Biological computation, automated causal reasoning

Office: A.V. Williams
Phone: 301-405-2686
reggia [at] cs.umd.edu
Home page

Ben Schneiderman, Ph.D.
Professor, Computer Science, ISR, UMIACS; Founding Director HCIL
Human-computer interaction, interface design.

Office: A.V. Williams
Phone: 301-405-2680
ben [at] cs.umd.edu
Home page

Chau-Wen Tseng, Ph.D.
Associate Professor, Computer Science and UMIACS
High-performance computing for bioinformatics applications.

Office: 4135 A.V. Williams
Phone: (301) 405-8010
tseng [at] cs.umd.edu
Home page

Amitabh Varshney, Ph.D.
Professor, Computer Science and Director, UMIACS
3D Computer Graphics and Scientific Visualization, molecular graphics, high-performance computing

Office: 4407 A.V. Williams
Phone: (301)405-6761
varshney [at] cs.umd.edu
Home page

James Yorke, Ph.D.
Distinguished University Professor of Mathematics and Physics
Institute for Physical Sciences and Technology (IPST)
Chaos theory, weather prediction, genome research, population dynamics of infectious disease.

Office: 4311 Computer & Space Science Bldg
Phone: (301)405-4875
yorke2 [at] ipst.umd.edu
Home page

Postdocs

Radhouane Aniba, Ph.D.
Postdoctoral Research Associate

Office: 3111 Biomolecular Sciences Bldg
Phone:301-405-1906
aniba [at] umiacs.umd.edu

Irina Astrovskaya, Ph.D.
Postdoctoral Research Associate

Office: 3120E Biomolecular Sciences Bldg
Phone: 301-405-9782
irina [at] umiacs.umd.edu

Joe Carl, Ph.D.
Postdoctoral Research Associate

Office: 3104E Biomolecular Sciences Bldg
Phone: 301-405-8218
jcarl [at] umiacs.umd.edu

Henry Lin, Ph.D.
Postdoctoral Research Associate

Office: 3120E Biomolecular Sciences Bldg
Phone: 301-405-7269
henrylin [at] umiacs.umd.edu
Home page

Nitish Mishra, Ph.D.
Postdoctoral Research Associate

Office: 3104E Biomolecular Sciences Bldg
Phone: 301-405-8218
nitish [at] umiacs.umd.edu

Jia Zeng, Ph.D.
Postdoctoral Research Associate

Office: 3111 Biomolecular Sciences Bldg
Phone: 301-405-1906
jiazeng [at] umiacs.umd.edu

Graduate Students


Daniel Ayres
Graduate student

Office: 3122 Biomolecular Sciences Bldg
Phone: 301-405-7408
ayres [at] cs.umd.edu

Wikum Dinalankara
Graduate student

Office: 3104B Biomolecular Sciences Bldg
Phone: 301-405-3234
wikum [at] cs.umd.edu

Geet Duggal
Graduate student

Office: 3120A Biomolecular Sciences Bldg
Phone: 301-405-7444
geetduggal [at] gmail.com

Darya Filippova
Graduate student

Office: 3120A Biomolecular Sciences Bldg
Phone: 301-405-7444
dfilippo [at] cs.umd.edu


Mohammad Ghodsi
Graduate student

Office: 3120G Biomolecular Sciences Bldg
Phone: 301-405-3234
ghodsi [at] cs.umd.edu

Chris Hill
Graduate student

Office: 3104B Biomolecular Sciences Bldg
Phone: 301-405-3234
cmhill [at] umd.edu

Joyce Hsiao
Graduate student

Office: 3104B Biomolecular Sciences Bldg
Phone: 301-405-3234
chsiao [at] umiacs.umd.edu

Rebecca Just
Graduate student

Office: 3122 Biomolecular Sciences Bldg
Phone: 301-405-7408
rsjust [at] umiacs.umd.edu

Daehwan Kim
graduate student

Office: 3104B Biomolecular Sciences Bldg
Phone: 301-405-3234
infphilo [at] umiacs.umd.edu
Home page

Ben Langmead
graduate student

Office: 3104B Biomolecular Sciences Bldg
Phone: 301-405-3234
langmead [at] umd.edu
Home page

Bo Liu
Graduate Student

Office: 3120G Biomolecular Sciences Bldg
Phone: 301-405-7169
boliu [at] umiacs.umd.edu
Home Page

 

Justin Malin
Graduate Student

Office: 3120A Biomolecular Sciences Bldg
Phone: 301-405-7444
jlmalin1020 [at] yahoo.com

 

Guillaume Marçais
Graduate Student (Applied Math)

Office: 4319 Computer & Space Science Bldg
Phone: 301-405-4844
gus [at] math.umd.edu

Kwame Okrah
Graduate student

Office: 3104B Biomolecular Sciences Bldg
Phone:301-405-3234
kwameokrah [at] math.umd.edu

Rob Patro
Graduate student

Office: 3120A Biomolecular Sciences Bldg
Phone:301-405-7444
rob.patro [at]gmail.com

Joseph Paulson
Graduate student

Office: 3104B Biomolecular Sciences Bldg
Phone: 301-405-3234
jpaulson [at] umiacs.umd.edu

Emre Sefer
Graduate student

Office: 3120A Biomolecular Sciences Bldg
Phone:301-405-7444
esefer [at] cs.umd.edu

Praveen Vaddadi
Graduate Student

Office: 3104B Biomolecular Sciences Bldg
Phone: 301-405-3234
praveen [at] cs.umd.edu

Hao Wang
Graduate Student

Office: 3120A Biomolecular Sciences Bldg
Phone: 301-405-7444
hwang825 [at] umd.edu

Derrick Wood
Graduate Student

Office: 3104B Biomolecular Sciences Bldg
Phone: 301-405-3234
dwood [at] cs.umd.edu
Home page

Administrative Staff

Denise Cross
Coordinator

Office: 3120D Biomolecular Sciences Bldg
Phone: 301-405-5936
dcross [at] umiacs.umd.edu

 

Jennifer Newlin

Office: 3115 Biomolecular Sciences Bldg
Phone: 301-405-9905
jnewlin [at] umiacs.umd.edu


Norma Brinkley

Office: 3101 Biomolecular Sciences Bldg
Phone: 301-405-5142
nbrinkle [at] umiacs.umd.edu

Scientific Staff

Adam Bazinet
Faculty Research Assistant

Office: 3122 Biomolecular Sciences Bldg
Phone: 301-405-7408
pknut777 [at] umiacs.umd.edu
Home page

Yevgeny Deviatov
Web Developer

Office: 3122 Biomolecular Sciences Bldg
Phone: 301-405-7408
ydeviato [at] umiacs.umd.edu

Derrick Hinkle
Web Developer

Office: 3122 Biomolecular Sciences Bldg
Phone: 301-405-7408
dhinkle9 [at] umiacs.umd.edu

 

Dan Sommer
Bioinformatics Engineer

Office: 3120B Biomolecular Sciences Bldg
Phone: 301-405-7384
dsommer [at] umiacs.umd.edu

Former Scientists and Students

Jonathan Allen, Ph.D.
Postdoctoral Fellow
Lawrence Livermore National Laboratory

LLNL email:
allen99 [at] llnl.gov
CBCB home page


Sam Angiuoli, Ph.D.
Bioinformatics Manager at Institute for Genome Sciences University of Maryland School of Medicine
Graduate Student

Office: 3120A Biomolecular Sciences Bldg
Phone: 301-405-7444
angiuoli [at] cs.umd.edu
Home page

 

Kunmi Ayanbule
Bioinformatics Engineer

Office: 3120E Biomolecular Sciences Bldg
Phone: 301-405-7269
ayanbule [at] umiacs.umd.edu
Home page


Arthur Brady, Ph.D.
Postdoctoral Research Associate

Office: 3104D Biomolecular Sciences Bldg
Phone: 301-405-8772
abrady [at] umiacs.umd.edu
Home Page

Arthur Delcher, Ph.D.
Senior Research Scientist
Professor Emeritus, Loyola College in Maryland
DNA sequence assembly, sequence comparison, statistical modeling of sequence data

Office: 3107 Biomolecular Sciences Bldg
Phone: 301-405-9468
adelcher [at] umiacs.umd.edu
Home page

Liliana Florea, Ph.D.
Assistant Research Scientist
Genome analysis and comparison; cDNA-to-genome alignment; Gene and alternative splicing annotation; Microbial comparative genomics; MiRNA genomics; Computational vaccine design.

Office: 3119 Biomolecular Sciences Bldg #296
Phone: (301) 405-9901
florea [at] umiacs.umd.edu
Home page

David Kelley, Ph.D.
graduate student

3120g Biomolecular Sciences Bldg
Phone: 301-405-3234
dakelley [at] umiacs.umd.edu
Home page

Sergey Koren, Ph.D.
Scientist, Bioinformatics
National Biodefense Analysis and Countermeasures Center
Battelle National Biodefense Institute

sergek [at] umd.edu
Home page

Grecia Lapizco-Encinas, Ph.D.
Graduate Student (Computer Science)

Office: 3120A Biomolecular Sciences Bldg
Phone: 301-405-7444
Email: glapizco [at] cs.umd.edu
Home page

Woei-Jyh (Adam) Lee, Ph.D.
Postdoctoral Fellow
National Center for Biotechnology Information
National Library of Medicine
National Institutes of Health

Office: Bldg. 38A, 6N611C
8600 Rockville Pike
Bethesda, MD 20894-3829
Phone: 301-496-9293
adamlee [at] umiacs.umd.edu

Tanja Magoc, Ph.D.
Postdoctoral Research Associate

Office: 3104D Biomolecular Sciences Bldg
Phone: 301-405-8804
tmagoc [at] umiacs.umd.edu
Home Page

 

Niranjan Nagarajan, Ph.D.
Postdoctoral Fellow

Office: 3104D Biomolecular Sciences Bldg
Phone: 301-405-8804
niranjan [at] umiacs.umd.edu
Home page

Saket Navlakha, Ph.D.
graduate student

Office: 3120g Biomolecular Sciences Bldg
Phone: 301-405-3234
saket [at] cs.umd.edu
Home page

Mihaela Pertea, Ph.D.
Assistant Research Scientist
Computational gene finding, splice site prediction, sequence motif finding

Office: 3109 Biomolecular Sciences Bldg
Phone: 301-405-9762
mpertea [at] umiacs.umd.edu
Home page

Geo Pertea
Bioinformatics Engineer

Office: 3120E Biomolecular Sciences Bldg
Phone: 301-405-9782
gpertea [at] umiacs.umd.edu

Adam Phillippy, Ph.D.
Principal Investigator, Bioinformatics
National Biodefense Analysis and Countermeasures Center
Battelle National Biodefense Institute

amp [at] umiacs.umd.edu
Home page

Daniela Puiu
Bioinformatics Engineer

Office: 3104G Biomolecular Sciences Bldg
Phone: 301-405-3403
dpuiu@umiacs.umd.edu

Mike Schatz, Ph.D.
Assistant Professor of Quantitative Biology
Cold Spring Harbor Laboratory

mschatz [at] umiacs.umd.edu
Home page

Megan Smedinghoff
graduate student

Office: 3104B Biomolecular Sciences Bldg
Phone: 301-405-3234
smeds [at] umd.edu
Home page

Cole Trapnell, Ph.D.
Postdoctoral Fellow
The Broad Institute

cole [at] cs.umd.edu
Home page

Todd Treangen, Ph.D.
Postdoctoral Research Associate

Office: 3120E Biomolecular Sciences Bldg
Phone: 301-405-7269
treangen [at] umiacs.umd.edu
Home page

James Robert White, Ph.D.
Institute for Genome Sciences
University of Maryland School of Medicine

whitej [at] umd.edu
Home page