2013. AWTY, BAMBE, BEAGLE, BEAST, BEAUti, Bio++, DataMonkey, DendroPy, DnaSP, ENCprime/SeqCount, FigTree, GARLI, genealogical sorting index (gsi), HyPhy, IMa2, jModelTest, JELLYFISH, LAMARC, MacClade, MEGA, Mesquite .... Dictionary of Bioinformatics.
2013. Correlated evolution of positions within mammalian cis elements PLoS ONE. PLoS ONE. in press:126.
2013. Genetic loci associated with delayed clearance of Plasmodium falciparum following artemisinin treatment in Southeast Asia.. Proceedings of the National Academy of Sciences of the United States of America. 110:240-5.
2013. Intrinsically disordered proteins and conformational noise: Implications in cancer. Cell Cycle. 12(1):26-31.
2012. Advances in Computers.
2012. AGORA: Assembly Guided by Optical Restriction Alignment. BMC bioinformatics. 13:189.
2012. Automatic Authentication of Banknotes. IEEE Transactions on Information Forensics & Security.
2012. BEAGLE: An Application Programming Interface and High-Performance Computing Library for Statistical Phylogenetics. Systematic BiologySyst Biol. 61(1):170-173.
2012. Besting the Quiz Master: Crowdsourcing Incremental Classification Games. Empirical Methods in Natural Language Processing.
2012. #bias: Measuring the Tweeting Behavior of Propagandists. Sixth International AAAI Conference on Weblogs and Social Media.
2012. A Blur-robust Descriptor with Applications to Face Recognition. IEEE Transactions on Pattern Analysis and Machine Intelligence. PP(99):1-1.
2012. Class consistent k-means: Application to face and action recognition. Computer Vision and Image Understanding. 116(6):730-741.
2012. Co-designing an e-health tutorial for older adults. Proceedings of the 2012 iConference. :240-247.
2012. Collecting Semantic Similarity Ratings to Connect Concepts in Assistive Communication Tools. Modeling, Learning, and Processing of Text Technological Data StructuresModeling, Learning, and Processing of Text Technological Data Structures. 370:81-93.
2012. A comparative evaluation of sequence classification programs. BMC Bioinformatics. 13:92.
2012. Constructing Inverted Files: To MapReduce or Not Revisited. UMIACS-TR-2012-03
2012. Conversion of viable but nonculturable enteric bacteria to culturable by co‐culture with eukaryotic cells. Microbiology and Immunology. 56(5):342-345.
2012. Deep Sequencing of the Oral Microbiome Reveals Signatures of Periodontal Disease. PloS one. 7:e37919.
2012. Density-Based Multifeature Background Subtraction with Support Vector Machine. Pattern Analysis and Machine Intelligence, IEEE Transactions on. 34(5):1017-1023.
2012. Dictionary-based Face Recognition Under Variable Lighting and Pose. IEEE Transactions on Information Forensics and Security. PP(99):1-1.
2012. Dimension-independent multi-resolution morse complexes. Computers & Graphics.
2012. Disaggregated water sensing from a single, pressure-based sensor: An extended analysis of HydroSense using staged experiments. Pervasive and Mobile Computing. 8(1):82-102.
2012. Dynamic changes in motivation in collaborative citizen-science projects. Proceedings of the ACM 2012 conference on Computer Supported Cooperative Work. :217-226.