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bioinfo::na_nmer_overlap Class Template Reference
na_nmer_traits defines character traits for a bit compressed n-length nucleic acid character sequence where a series of these character sequences are overlapping.
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#include <bio_bit_traits.h>
Inheritance diagram for bioinfo::na_nmer_overlap:
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Detailed Description
template<size_t NB> class bioinfo::na_nmer_overlap
na_nmer_traits defines character traits for a bit compressed n-length nucleic acid character sequence where a series of these character sequences are overlapping.
Extends bio_bit_traits As an example, if we are working with the sequence "atcataatc", where n = 3, the string is defined as: atc tca cat ata taa aat atc (trailing tc will be ignored) for n=3, NB=na_min_traits::bit_size() * n. For this example NB=8 and memeroy storage is the same as the original sequence.
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See also:
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bio_bit_traits, nmer_string
The documentation for this class was generated from the following file: