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bioinfo::na_min_traits< NB > Class Template Reference

this is the beginings of a "traits" specification class which provides the information we need to characterize the types of sequences we are working with More...

#include <na_traits.h>

Inheritance diagram for bioinfo::na_min_traits< NB >:

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Public Types

typedef std::char_traits<
std::bitset< NB > >::char_type 
char_type
typedef std::char_traits<
char >::char_type 
basic_char_type

Static Public Member Functions

std::size_t bit_size ()
basic_char_type char_code (char_type)
std::size_t bit_code (basic_char_type)
bool valid_code (basic_char_type)

Detailed Description

template<size_t NB>
class bioinfo::na_min_traits< NB >

this is the beginings of a "traits" specification class which provides the information we need to characterize the types of sequences we are working with

na_min_traits refers to case where we're working with nucleotide sequences and assume only 4 character codes. adenine,cytosine,guanine,thymine.


The documentation for this class was generated from the following files: