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bioinfo::nucleic_acid_min_traits< NB > Class Template Reference

this is the beginings of a "traits" specification class which provides the information we need to characterize the types of sequences we are working with More...

#include <nucleic_acid_bit_char_traits.h>

Inheritance diagram for bioinfo::nucleic_acid_min_traits< NB >:

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Collaboration diagram for bioinfo::nucleic_acid_min_traits< NB >:

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List of all members.

Public Types

typedef bit_char_traits< NB
>::char_type 
char_type
typedef std::char_traits<
char >::char_type 
basic_char_type

Static Public Member Functions

std::size_t bit_size ()
basic_char_type char_code (char_type)
std::size_t bit_code (basic_char_type)
bool valid_code (basic_char_type)

Detailed Description

template<size_t NB>
class bioinfo::nucleic_acid_min_traits< NB >

this is the beginings of a "traits" specification class which provides the information we need to characterize the types of sequences we are working with

nucleic_acid_min_traits refers to case where we're working with nucleotide sequences and we can assume that only the 4 character codes are used. base14 would refer to the full 14 character codes this is important for bit compression


The documentation for this class was generated from the following files: