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mfasta.h

00001 #ifndef MFASTA_H
00002 #define MFASTA_H 1
00003 
00004 #include <string>
00005 #include <list>
00006 #include <iostream>
00007 #include "fasta.h"
00008 
00009 namespace bioinfo
00010 {
00011 
00021   template <typename seqtype = std::string>
00022     class mfasta : public std::list<fasta<seqtype>*> 
00023     {
00024       public:
00030       mfasta(const std::string&);
00031 
00032       ~mfasta();
00033 
00038       void write(const std::string&) const;
00039 
00040       void read(const std::string&);
00041 
00042     };
00043 
00044 } // namespace bioinfo;
00045 
00046 namespace std
00047 {
00048   template <typename seqtype>
00049   std::ostream& 
00050     operator<<(std::ostream&, const bioinfo::mfasta<seqtype>&);
00051 
00052   template <typename seqtype>
00053   std::istream& 
00054     operator>>(std::istream&, const bioinfo::mfasta<seqtype>&);
00055 }
00056 
00057 
00058 #include "mfasta.hpp"
00059 
00060 #endif // MFASTA_H