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using the bioinfo library

#include "fasta.h" // #include "bit_string.h" // interface file for special strings #include #include #include

using bioinfo::fasta; using bioinfo::nmer_string;

using namespace std;

int main(int argc, char* argv[]) { try {

/** 4 nucleic acid character codes (2 bits for now).

See also:
nmer_string, na_nmer_overlap
making the nmer_string 6 bits results in 3 nucleic acids per "character" (3-mer)