assembly and analysis toolkit for metagenomicsmetAMOS is an integrated assembly and analysis pipeline for metagenomic data. It is built around the Bambus2 metagenomic scaffolder and includes many current tools for assembly, gene finding, and taxonomic classification. For more details see the gitHub link below.
- Link to GitHub page (inlcudes instructions for downloading)
- Virtual machine containing metAMOS, a number of useful utilities, and metagenomic data from the HMP project (Warning: 28 GB in size) Information about the virtual machine available in slides from a recent metagenomic course in Santiago, Chile.
- Scripts used for analyzing the HMP data
Detailed documentation will be made available soon. For now please refer to the GitHub page listed above.