assembly and analysis toolkit for metagenomics

metAMOS is an integrated assembly and analysis pipeline for metagenomic data. It is built around the Bambus2 metagenomic scaffolder and includes many current tools for assembly, gene finding, and taxonomic classification. metAMOS is under active development and changes quite frequently

Obtaining metAMOS

You can get metAMOS from the metAMOS GitHub page. While there please check out other software from MARBL (The MARyland Bioinformatics Labs) - a loose consortium of bioinformatics developers started by current and former members of the University of Maryland Center for Bioinformatics and Computational Biology.


metAMOS documentation at Read the Docs - provides all the information you need to get started.

Research project: 
UMIACS Investigators: 
External Collaborators: 
Todd Treangen
Sergey Koren