merSize=14 mhap=-k 14 --num-hashes 1024 --num-min-matches 3 --threshold 0.04 --weighted useGrid=1 scriptOnGrid=1 ovlMemory=32 ovlStoreMemory=32000 threads=32 ovlConcurrency=1 cnsConcurrency=8 merylThreads=32 merylMemory=32000 ovlRefBlockSize=20000 frgCorrThreads = 16 frgCorrBatchSize = 100000 ovlCorrBatchSize = 100000 sgeScript = -pe threads 1 sgeConsensus = -pe threads 8 sgeOverlap = -pe threads 15 –l mem=2GB sgeCorrection = -pe threads 15 –l mem=2GB sgeFragmentCorrection = -pe threads 16 –l mem=2GB sgeOverlapCorrection = -pe threads 1 –l mem=16GB # relax overlap parameters asmOvlErrorRate=0.10 asmUtgErrorRate=0.07 asmCgwErrorRate=0.10 asmCnsErrorRate=0.10 utgGraphErrorRate=0.07 utgGraphErrorLimit=3.25 utgMergeErrorRate=0.0825 utgMergeErrorLimit=5.25 asmOBT=0