notes |
nuc sens % |
nuc spec % |
nuc acc % |
gt/ag sens % |
gt/ag spec % |
atg/ tag sens |
atg/ tag spec |
exon sens % |
exon spec % |
exact genes % |
basic parameterization |
95 |
100 |
95 |
64 |
55 |
60 |
59 |
53 |
48 |
40 |
small mean intron size
& aggressive exon optimism |
97 |
100 |
97 |
84 |
75 |
77 |
63 |
73 |
62 |
57 |
plasmodium | tetrahymena | |
transcript length | 2351.5
±2490.6 (60-15906) |
166.5
±105.8 (21-1188) |
transcript extent | 3573.2
±3315.9 (66-21790) |
176
±130.5 (21-1354) |
exons/transcript | 2.9 ±2.4
(1-17) |
1.1 ±0.3
(1-4) |
log(P[coding]/ P[noncoding]) |
394.5
±375.4 (23.1-3461) |
43.5
±23.7 (13.7-288.7) |
GC |
21% | 22% |
AT |
79% |
78% |
A |
41% |
39% |
T |
39% |
39% |
C |
10% |
11% |
G |
11% |
11% |
plasmodium |
tetrahymena |
|
donor scores |
-75.3 +/- 6.2 |
-76.4 +/- 5.3 |
acceptor scores |
-54.3 +/-5.0 |
-54.5 +/- 4.5 |
start codon scores |
-37.8 +/- 3.9 |
-38.4 +/- 3.9 |
stop codon scores |
-60.9 +/- 7.6 |
-64.0 +/- 6.0 |
density of putative donors |
0.046 |
0.043 |
density of putative acceptors |
0.043 |
0.068 |
density of putative start codons |
0.041 |
0.028 |
density of putative stop codons |
0.131 |
0.030 |
scores* of putative single-exons |
-225 |
-1285 |
scores* of putative initial-exons |
-130 |
-806 |
scores* of putative internal-exons |
-109 |
-796 |
scores* of putative final-exons |
-153 |
-1135 |
lengths of putative single-exons |
2278 N=883,748 |
567 N=147,038 |
lengths of putative initial-exons |
2019 N=767,321 |
614 N=445,441 |
lengths of putative internal-exons |
2322 N=1,503,203 |
721 N=1,659,927 |
lengths of putative final-exons |
2506 N=3,465,709 |
758 N=818,248 |
total sequence length |
1,501,292 bp |
1,523,430 bp |