2007
- E. Ghedin et al. Draft genome of the filarial nematode parasite Brugia malayi. Science 317 :1756-1760, 2007.
-
Clark, A. G., M. B. Eisen, et al. Evolution of genes and genomes on the Drosophila phylogeny. Nature 450(7167): 203-18, 2007.
- D.D. Sommer, A.L. Delcher, S.L. Salzberg, M. Pop. Minimus: a fast, lightweight genome assembler. BMC Bioinformatics, 2007. 8: p. 64.
2006
- S.R. Gill, M. Pop, R.T. DeBoy, P. Eckburg, I. Hance, B. Samuel, J. Gordon, D. Relman, C.M. Fraser, K.E. Nelson. Metagenomic analysis of the human distal gut microbiome. Science 312, pp. 1355-1359, 2006
- M. Pop. DNA sequence assembly algorithms. in 2006 Yearbook of Science and Technology. McGraw Hill; 2006.
2005
- B.V. Geisbrecht, M. Pop.
An
optimized system for expression and purification of secreted bacterial
proteins. Protein Expr. Purif. 46(1):23-32, 2005.
- S.L. Salzberg, J.D. Hotopp, A.L.
Delcher, M. Pop, M.B. Eisen, W.C. Nelson. Serendipitous
discovery of Wolbachia genomes in multiple Drosophila species.
Genome Biology 6(3), pp. R23, 2005
- N.M. El-Sayed et al. The
Genome Sequence of Trypanosoma cruzi, Etiologic Agent of Chagas Disease.
Science 309 (5733), pp. 409-415, 2005
- B. Loftus et al. The genome of
the protist parasite Entamoeba histolytica. Nature 433, pp.
865-868, 2005.
2004
- M. Pop, A. Phillippy, A.L.
Delcher and S.L. Salzberg. Comparative
genome assembly. Briefings in Bioinformatics. 5(3), pp.
237-248, 2004.
- M. Pop. Shotgun
sequence assembly. Advances in Computers vol. 60, M. Zelkowitz
ed. pp. 193-248, June 2004.
- M. Pop, D. Kosack. Using
the TIGR Assembler in shotgun-sequencing projects. Methods Mol Biol 255: 279-94, 2004.
- M. Pop, D.S. Kosack, S.L.
Salzberg. Hierarchical
scaffolding with Bambus. Genome Research
14(1), pp. 149-159, 2004.
2003 and earlier
- E.F. Kirkness, V. Bafna, A.L.
Halpern, S. Levy, K. Remington, D.B. Rusch, A.L. Delcher, M. Pop,
W. Wang, C.M. Fraser, J.C. Venter. The dog genome: survey
sequencing and comparative analysis. Science 301(26), pp.
1898-1903, 2003
- T.D. Read et al. The genome of
Bacillus anthracis Ames and comparison to closely related bacteria.
Nature 423, pp. 81-86, 2003
- K.E. Nelson et al. Complete
genome sequence and comparative analysis of the metabolically versatile
Pseudomonas putida KT2440. Environmental Microbiology 4(12), pp.
799-808, 2002
- J.M. Carlton et al. Genome
sequence and comparative analysis of the model rodent malaria parasite
Plasmodium yoelii yoelii. Nature 419, pp. 512-519, 2002
- M. Pop, S. L. Salzberg, M.
Shumway. Genome
Sequence Assembly: Algorithms and Issues. IEEE Computer 35(7)
2002, pp. 47-54. Copyright 2002 IEEE. Reproduced with permission from
IEEE.
- T.D. Read, S.L.Salzberg, M. Pop,
M. Shumway, L. Umayam, L. Jiang, E. Holtzapple, J. Busch, K.L. Smith,
J.M. Schupp, D. Solomon, P. Keim, C.M. Fraser. Comparative genome
sequencing as a method for discovery of novel polymorphisms in Bacillus
anthracis. Science 296, pp. 2028-2033, 2002
- M. Pop, G. Barequet, C.
Duncan, M.T. Goodrich, W. Huang, S. Kumar. Efficient
Perspective-Accurate Silhouette Computation and Applications;
Proceedings of the 17th ACM Symposium on Computational Geometry, pp. 60-68, June
3-5 2001, Tufts University, Medford, MA
- E. Brill, M. Pop. Unsupervised
Learning of Disambiguation Rules for Part-of-Speech Tagging; in
Natural Language Processing Using Very Large Corpora; Kluwer Academic
Publishers; November 1999
- S. R. Kosaraju, M. Pop. De-Amortization
of Algorithms; The Fourth Annual International Computing and
Combinatorics Conference , COCOON '98, August 12-14, 1998; Taipei,
Taiwan
- A. Aggarwal, S. R. Kosaraju, M. Pop. Drawing of
two-dimensional irregular meshes; GD '98: Sixth Symposium on Graph
Drawing, August 13-15,1998; Montreal, Canada. Lecture Notes in Computer
Science, vol. 1547, pp. 1-14.
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