Research Publications

Pages

2012
Banakar V., G. de Magny C, Jacobs J., Murtugudde R., Huq A., Wood R.J, Colwell RR. 2012. Temporal and Spatial Variability in the Distribution of Vibrio vulnificus in the Chesapeake Bay: A Hindcast Study. EcoHealthEcoHealth. Google Scholar BibTeX EndNote XML RIS
Shi W, Wahba G, Irizarry RA, Bravo HCorrada, Wright SJ. 2012. The partitioned LASSO-patternsearch algorithm with application to gene expression data. BMC bioinformaticsBMC Bioinformatics. 13 Google Scholar BibTeX EndNote XML RIS
Savage AF, Cerqueira GC, Regmi S, Wu Y, Sayed NMEl, Aksoy S. 2012. Transcript expression analysis of putative Trypanosoma brucei GPI-anchored surface proteins during development in the tsetse and mammalian hosts.. PLoS Negl Trop Dis. 6(6):e1708. PubMed DOI Google Scholar BibTeX EndNote XML RIS
Alam M, M. Islam T, Rashed SManzur, Johura F-T, Bhuiyan NA, Delgado G, Morales R, Mendez JLuis, Navarro A, Watanabe H et al.. 2012. Vibrio Cholerae Classical Biotype Strains Reveal Distinct Signatures in Mexico. Journal of Clinical MicrobiologyJ. Clin. Microbiol.Journal of Clinical MicrobiologyJ. Clin. Microbiol.. Google Scholar BibTeX EndNote XML RIS
Pop M.. 2012. We are what we eat: how the diet of infants affects their gut microbiome. Genome BiologyGenome Biology. 13 Google Scholar BibTeX EndNote XML RIS
Ricaldi JN, Fouts DE, Selengut J., Harkins DM, Patra KP, Moreno A, Lehmann JS, Purushe J, Sanka R, Torres M et al.. 2012. Whole genome analysis of Leptospira licerasiae provides insight into leptospiral evolution and pathogenicity. PLoS neglected tropical diseasesPLoS neglected tropical diseases. 6 Google Scholar BibTeX EndNote XML RIS
Ricaldi JN, Fouts DE, Selengut JD, Harkins DM, Patra KP, Moreno A, Lehmann JS, Purushe J, Sanka R, Torres M et al.. 2012. Whole genome analysis of Leptospira licerasiae provides insight into leptospiral evolution and pathogenicity.. PLoS Negl Trop Dis. 6(10):e1853. PubMed DOI Google Scholar BibTeX EndNote XML RIS
Carl JTrgovcich, Hannenhalli S. 2012. Widespread evidence of viral miRNAs targeting host pathways. BMC GenomicsBMC Genomics. Google Scholar BibTeX EndNote XML RIS

2011
Kanodia J.S, Kim Y., Tomer R., Khan Z., Chung K., Storey J.D, Lu H., Keller P.J, Shvartsman S.Y. 2011. A computational statistics approach for estimating the spatial range of morphogen gradients. Development. 138(22):4867-4874. DOI Google Scholar BibTeX EndNote XML RIS
Kanodia JS, Kim Y, Tomer R, Khan Z, Chung K, Storey JD, Lu H, Keller PJ, Shvartsman SY. 2011. A computational statistics approach for estimating the spatial range of morphogen gradients.. Development. 138(22):4867-74. PubMed DOI Google Scholar BibTeX EndNote XML RIS
Kingsford C, Zaslavsky E, Singh M. 2011. A cost-aggregating integer linear program for motif finding. Journal of Discrete AlgorithmsJournal of Discrete Algorithms. 9 Google Scholar BibTeX EndNote XML RIS
Rivas A, Boahene KD, Bravo HCorrada, Tan M, Tamargo RJ, Francis HW. 2011. A Model for Early Prediction of Facial Nerve Recovery After Vestibular Schwannoma Surgery. Otology & Neurotology. 32(5):826-833. DOI Google Scholar BibTeX EndNote XML RIS
Maximo A., Patro R., Varshney A, Farias R.. 2011. A robust and rotationally invariant local surface descriptor with applications to non-local mesh processing. Graphical ModelsGraphical Models. 73 Google Scholar BibTeX EndNote XML RIS
Yaklichkin SYu, Darnell DK, Pier MV, Antin PB, Hannenhalli S. 2011. Accelerated evolution of 3'avian FOXE1 genes, and thyroid and feather specific expression of chicken FoxE1. BMC Evolutionary BiologyBMC Evolutionary Biology. 11 Google Scholar BibTeX EndNote XML RIS
Liu B, Gibbons T, Ghodsi M, Treangen T, Pop M.. 2011. Accurate and fast estimation of taxonomic profiles from metagenomic shotgun sequences. BMC GenomicsBMC Genomics. 12 Google Scholar BibTeX EndNote XML RIS
Khan Z, Amini S, Bloom JS, Ruse C, Caudy AA, Kruglyak L, Singh M, Perlman DH, Tavazoie S. 2011. Accurate proteome-wide protein quantification from high-resolution 15N mass spectra. Genome Biology. 12(12):R122. DOI Google Scholar BibTeX EndNote XML RIS
Khan Z, Amini S, Bloom JS, Ruse C, Caudy AA, Kruglyak L, Singh M, Perlman DH, Tavazoie S. 2011. Accurate proteome-wide protein quantification from high-resolution 15N mass spectra.. Genome Biol. 12(12):R122. PubMed DOI Google Scholar BibTeX EndNote XML RIS
Huq A., Grim C.J, Colwell RR. 2011. Aquatic Realm and Cholera. Epidemiological and Molecular Aspects on CholeraEpidemiological and Molecular Aspects on Cholera. Google Scholar BibTeX EndNote XML RIS
Wetzel J., Kingsford C, Pop M.. 2011. Assessing the benefits of using mate-pairs to resolve repeats in de novo short-read prokaryotic assemblies. BMC bioinformaticsBMC Bioinformatics. 12 Google Scholar BibTeX EndNote XML RIS
Rasko D.A, Worsham P.L, Abshire T.G, Stanley S.T, Bannan J.D, Wilson M.R, Langham R.J, Decker R.S, Jiang L., Read T.D et al.. 2011. Bacillus anthracis comparative genome analysis in support of the Amerithrax investigation. Proceedings of the National Academy of SciencesProceedings of the National Academy of Sciences. 108 Google Scholar BibTeX EndNote XML RIS

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