Research Publications

Pages

2011
Filho JEMartine, Lopes RM, Rivera ING, Colwell RR.  2011.  Vibrio Cholerae O1 Detection in Estuarine and Coastal Zooplankton. Journal of Plankton ResearchJ. Plankton Res.Journal of Plankton ResearchJ. Plankton Res.. 33
Jutla AS, Akanda AS, Griffiths JK, Colwell RR, Islam S.  2011.  Warming Oceans, Phytoplankton, and River Discharge: Implications for Cholera Outbreaks. The American Journal of Tropical Medicine and HygieneAm J Trop Med HygThe American Journal of Tropical Medicine and HygieneAm J Trop Med Hyg. 85
2010
Marbach-Ad G, McAdams KC, Benson S, Briken V, Cathcart L, Chase M, El-Sayed NM, Frauwirth K, Fredericksen B, Joseph SW et al..  2010.  A model for using a concept inventory as a tool for students' assessment and faculty professional development.. CBE Life Sci Educ. 9(4):408-16.
White JR, Navlakha S, Nagarajan N, Ghodsi M-R, Kingsford C, Pop M..  2010.  Alignment and clustering of phylogenetic markers - implications for microbial diversity studies. BMC BioinformaticsBMC Bioinformatics. 11
Kingsford C, Schatz M., Pop M..  2010.  Assembly complexity of prokaryotic genomes using short reads. BMC bioinformaticsBMC Bioinformatics. 11
Cummings MP, Temple G.G.  2010.  Broader incorporation of bioinformatics in education: opportunities and challenges. Brief BioinformBrief Bioinform. 11
Bradd H., Christopher G., Nur H., Seon-Young C., Jongsik C., Thomas B., David B., Jean C., Chris D.J, Cliff H. et al..  2010.  Comparative genomic analysis reveals evidence of two novel Vibrio species closely related to V. cholerae. BMC MicrobiologyBMC Microbiology. 10
Hasan NA, Grim CJ, Haley BJ, Jongsik C, Alam M, Taviani E, Mozammel H, A. Munk C, Colwell RR.  2010.  Comparative Genomics of Clinical and Environmental Vibrio Mimicus. Proceedings of the National Academy of SciencesPNASProceedings of the National Academy of SciencesPNAS. 107
Choi J.H, Tang H., Kim S., Pop M..  2010.  Computational Approaches for Genome Assembly Validation. Biological Data MiningBiological Data Mining.
Senoh M, Ghosh‐Banerjee J, Ramamurthy T, Hamabata T, Kurakawa T, Takeda M, Colwell RR, G. Nair B, Takeda Y.  2010.  Conversion of viable but nonculturable Vibrio cholerae to the culturable state by co‐culture with eukaryotic cells. Microbiology and ImmunologyMicrobiology and Immunology. 54
Singh LN, Hannenhalli S.  2010.  Correlated Changes Between Regulatory Cis Elements and Condition-Specific Expression in Paralogous Gene Families. Nucleic Acids ResearchNucl. Acids Res.Nucleic Acids ResearchNucl. Acids Res.. 38
Taviani E, Grim CJ, Choi J, Jongsik C, Haley B, Hasan NA, Huq A, Colwell RR.  2010.  Discovery of novel Vibrio cholerae VSP‐II genomic islands using comparative genomic analysis. FEMS Microbiology LettersFEMS Microbiology Letters. 308
Purdy AE, Balch D, Lizárraga‐Partida MLeonardo, Islam MSirajul, Martinez‐Urtaza J, Huq A, Colwell RR, Bartlett DH.  2010.  Diversity and distribution of cholix toxin, a novel ADP‐ribosylating factor from Vibrio cholerae. Environmental Microbiology ReportsEnvironmental Microbiology Reports. 2
Caburlotto G, Lleò MM, Hilton T, Huq A, Colwell RR, Kaper JB.  2010.  Effect on Human Cells of Environmental Vibrio Parahaemolyticus Strains Carrying Type III Secretion System 2. Infection and ImmunityInfect. Immun.Infection and ImmunityInfect. Immun.. 78
Vezzulli L, Pruzzo C, Huq A, Colwell RR.  2010.  Environmental reservoirs of Vibrio cholerae and their role in cholera. Environmental Microbiology ReportsEnvironmental Microbiology Reports. 2
Lin C-F, Mount SM, Jarmołowski A, Makałowski W.  2010.  Evolutionary dynamics of U12-type spliceosomal introns.. BMC Evol Biol. 10:47.
Roe A., Weller S., Baixeras J., Brown J.W, Cummings MP, Davis D.R, Horak M., Kawahara A.Y, Mitter C., Parr C.S et al..  2010.  Evolutionary framework for Lepidoptera model systems. Genetics and Molecular Biology of LepidopteraGenetics and Molecular Biology of Lepidoptera.
Navlakha S., Kingsford C.  2010.  Exploring Biological Network Dynamics with Ensembles of Graph Partitions. Proceedings of the PSB Pacific Symposium on Biocomputing. 15
Navlakha S, White J, Nagarajan N, Pop M., Kingsford C.  2010.  Finding Biologically Accurate Clusterings in Hierarchical Tree Decompositions Using the Variation of Information. Journal of Computational BiologyJournal of Computational Biology. 17
Nagarajan N, Cook C, Di Bonaventura MPia, Ge H, Richards A, Bishop-Lilly KA, DeSalle R, Read TD, Pop M..  2010.  Finishing genomes with limited resources: lessons from an ensemble of microbial genomes. BMC GenomicsBMC Genomics. 11

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