Research Publications

Pages

2009
White JRobert, Nagarajan N, Pop M.. 2009. Statistical Methods for Detecting Differentially Abundant Features in Clinical Metagenomic Samples. PLoS Comput BiologyPLoS Comput BiolPLoS Comput BiologyPLoS Comput Biol. 5 Google Scholar BibTeX EndNote XML RIS
Hannenhalli S, Kaestner KH. 2009. The evolution of Fox genes and their role in development and disease. Nature reviews. GeneticsNat Rev GenetNature reviews. GeneticsNat Rev Genet. 10 Google Scholar BibTeX EndNote XML RIS
Berriman M, Haas BJ, LoVerde PT, R Wilson A, Dillon GP, Cerqueira GC, Mashiyama ST, Al-Lazikani B, Andrade LF, Ashton PD et al.. 2009. The genome of the blood fluke Schistosoma mansoni.. Nature. 460(7253):352-8. PubMed DOI Google Scholar BibTeX EndNote XML RIS
Colwell RR, Chun J.. 2009. The Genus Vibrio and Related Genera. Practical handbook of microbiologyPractical handbook of microbiology. Google Scholar BibTeX EndNote XML RIS
Ward NL, Challacombe JF, Janssen PH, Henrissat B, Coutinho PM, Wu M, Xie G, Haft DH, Sait M, Badger J et al.. 2009. Three genomes from the phylum Acidobacteria provide insight into the lifestyles of these microorganisms in soils. Applied and environmental microbiologyApplied and environmental microbiology. 75 Google Scholar BibTeX EndNote XML RIS
Ward NL, Challacombe JF, Janssen PH, Henrissat B, Coutinho PM, Wu M, Xie G, Haft DH, Sait M, Badger J et al.. 2009. Three genomes from the phylum Acidobacteria provide insight into the lifestyles of these microorganisms in soils.. Appl Environ Microbiol. 75(7):2046-56. PubMed DOI Google Scholar BibTeX EndNote XML RIS
Regier J.C, Zwick A., Cummings MP, Kawahara A.Y, Cho S., Weller S., Roe A., Baixeras J., Brown J.W, Parr C. et al.. 2009. Toward reconstructing the evolution of advanced moths and butterflies (Lepidoptera: Ditrysia): an initial molecular study. BMC Evol BiolBMC Evol Biol. 9 Google Scholar BibTeX EndNote XML RIS
Zhang X-N, Mount SM. 2009. Two alternatively spliced isoforms of the Arabidopsis SR45 protein have distinct roles during normal plant development.. Plant Physiol. 150(3):1450-8. PubMed DOI Google Scholar BibTeX EndNote XML RIS
Langmead B, Trapnell C, Pop M., Salzberg SL. 2009. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome BiologyGenome Biology. 10 Google Scholar BibTeX EndNote XML RIS
Ford TE, Colwell RR, Rose JB, Morse SS, Rogers DJ, Yates TL. 2009. Using Satellite Images of Environmental Changes to Predict Infectious Disease Outbreaks. Emerging Infectious DiseasesEmerg Infect DisEmerging Infectious DiseasesEmerg Infect Dis. 15 Google Scholar BibTeX EndNote XML RIS
Colwell RR. 2009. Viable but not cultivable bacteria. Uncultivated MicroorganismsUncultivated Microorganisms. Google Scholar BibTeX EndNote XML RIS

2008
Cummings MP, Neel MC, Shaw KL. 2008. A GENEALOGICAL APPROACH TO QUANTIFYING LINEAGE DIVERGENCE. EvolutionEvolution. 62 Google Scholar BibTeX EndNote XML RIS
Kohlsdorf T., Cummings MP, Lynch V.J, Stopper G.F, Takahashi K., Wagner G.P. 2008. A molecular footprint of limb loss: sequence variation of the autopodial identity gene Hoxa-13. J Mol EvolJ Mol Evol. 67 Google Scholar BibTeX EndNote XML RIS
Zo Y-G, Colwell RR. 2008. A simple binomial test for estimating sequencing errors in public repository 16S rRNA sequences. Journal of Microbiological MethodsJournal of Microbiological Methods. 72 Google Scholar BibTeX EndNote XML RIS
Sethupathy P, Hannenhalli S. 2008. A Tutorial of the Poisson Random Field Model in Population Genetics. Advances in BioinformaticsAdvances in Bioinformatics. 2008 Google Scholar BibTeX EndNote XML RIS
Huq A, Whitehouse CA, Grim CJ, Alam M, Colwell RR. 2008. Biofilms in water, its role and impact in human disease transmission. Current Opinion in BiotechnologyCurrent Opinion in Biotechnology. 19 Google Scholar BibTeX EndNote XML RIS
Pop M., Salzberg SL. 2008. Bioinformatics challenges of new sequencing technology. Trends in GeneticsTrends in Genetics. 24 Google Scholar BibTeX EndNote XML RIS
Hannenhalli S. 2008. BIOINFORMATICS REVIEW. BIOINFORMATICSBioinformatics. 24 Google Scholar BibTeX EndNote XML RIS
Essien K, Hannenhalli S, Stoeckert CJ. 2008. Computational Analysis of Constraints on Noncoding Regions, Coding Regions and Gene Expression in Relation to Plasmodium Phenotypic Diversity. PLoS ONEPLoS ONEPLoS ONEPLoS ONE. 3 Google Scholar BibTeX EndNote XML RIS
Zo Y-G, Chokesajjawatee N, Arakawa E, Watanabe H, Huq A, Colwell RR. 2008. Covariability of Vibrio Cholerae Microdiversity and Environmental Parameters. Applied and Environmental MicrobiologyAppl. Environ. Microbiol.Applied and Environmental MicrobiologyAppl. Environ. Microbiol.. 74 Google Scholar BibTeX EndNote XML RIS

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