# for ecoli
PBcR -l K12 -s pacbio.spec -pbCNS -fastq ecoli_filtered.fastq genomeSize=4650000

# yeast
PBcR -l W303 -s pacbio.spec -pbCNS -fastq yeast_filtered.fastq genomeSize=12000000

#A. thaliana
PBcR -l athal -s pacbio.spec -pbCNS -fastq athal_filtered.fastq genomeSize=130000000 "localStaging=/scratch"

#D. melanogaster
PBcR -l dmel -s pacbio.spec -pbCNS -fastq dmel_filtered.fastq genomeSize=130000000 "localStaging=/scratch"

# human
PBcR -l human -s pacbio.human.spec -fastq human_filtered.fastq genomeSize=3000000000 sgeName=human “sge=-A human"
 "localStaging=/scratch"