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Fasta Module

Fasta Sequence handling module. More...


Namespaces

namespace  bioinfo
 bioinformatics generic programming toolkit.


Compounds

class  bioinfo::fasta
 fasta : read and write multi fasta files. More...

class  bioinfo::fasta_seq
 fasta_seq : represents a sequence type (seqtype) and a string identifier corresponding to the header in a fasta_seq file. More...


Functions

template<class _CharT, class _Traits, typename _NaTraits, size_t _Nb> basic_ostream<_CharT, _Traits>& operator<< (basic_ostream< _CharT, _Traits > &, const basic_string< bitset< _Nb >, _NaTraits > &)
 default operators *.

basic_istream<_CharT, _Traits>& operator>> (basic_istream< _CharT, _Traits > &, basic_string< bitset< _Nb >, _NaTraits > &)
basic_istream<_CharT, _Traits>& operator>> (basic_istream< _CharT, _Traits > &, basic_string< bitset< __Nb >, bioinfo::na_nmer_overlap< __Nb > > &)
 template specializations *.

template<class _CharT, class _Traits, size_t _Nb> basic_ostream<_CharT, _Traits>& operator<< (basic_ostream< _CharT, _Traits > &, const basic_string< bitset< _Nb >, bioinfo::na_nmer_overlap< _Nb > > &)
bool operator== (const basic_string< bitset< __Nb >, bioinfo::na_nmer_overlap< __Nb > > &, const string &)

Detailed Description

Fasta Sequence handling module.