Publications

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2000
Adams MD, Celniker SE, Holt RA, Evans CA, Gocayne JD, Amanatides PG, Scherer SE, Li PW, Hoskins RA, Galle RF et al..  2000.  The genome sequence of Drosophila melanogaster.. Science. 287(5461):2185-95.
2002
Hannenhalli S, Hubbell E, Lipshutz R, Pevzner P.  2002.  Combinatorial Algorithms for Design of DNA Arrays. Chip TechnologyChip Technology. 77
Hannenhalli S, Hubbell E, Lipshutz R, Pevzner P.  2002.  Combinatorial Algorithms for Design of DNA Arrays. Chip TechnologyChip Technology. 77
Hannenhalli S, Hubbell E, Lipshutz R, Pevzner P.  2002.  Combinatorial Algorithms for Design of DNA Arrays. Chip TechnologyChip Technology. 77
Read TD, Salzberg SL, Pop M., Shumway M, Umayam L, Jiang L, Holtzapple E, Busch JD, Smith KL, Schupp JM et al..  2002.  Comparative Genome Sequencing for Discovery of Novel Polymorphisms in Bacillus Anthracis. ScienceScienceScienceScience. 296
Carlton JM, Angiuoli SV, Suh BB, Kooij TW, Pertea M, Silva JC, Ermolaeva MD, Allen JE, Selengut J., Koo HL et al..  2002.  Genome sequence and comparative analysis of the model rodent malaria parasite Plasmodium yoelii yoelii. NatureNature. 419
Gardner MJ, Hall N, Fung E, White O, Berriman M, Hyman RW, Carlton JM, Pain A, Nelson KE, Bowman S et al..  2002.  Genome sequence of the human malaria parasite Plasmodium falciparum. NatureNature. 419
Gardner MJ, Shallom SJ, Carlton JM, Salzberg SL, Nene V, Shoaibi A, Ciecko A, Lynn J, Rizzo M, Weaver B et al..  2002.  Sequence of Plasmodium falciparum chromosomes 2, 10, 11 and 14. NatureNature. 419
2003
C. Buell R, Joardar V, Lindeberg M, Selengut J., Paulsen IT, Gwinn ML, Dodson RJ, DeBoy RT, A. Durkin S, Kolonay JF et al..  2003.  The complete genome sequence of the Arabidopsis and tomato pathogen Pseudomonas syringae pv. tomato DC3000. Proceedings of the National Academy of Sciences of the United States of AmericaProceedings of the National Academy of Sciences of the United States of America. 100
Read TD, Peterson SN, Tourasse N, Baillie LW, Paulsen IT, Nelson KE, Tettelin H, Fouts DE, Eisen JA, Gill SR et al..  2003.  The genome sequence of Bacillus anthracis Ames and comparison to closely related bacteria. NatureNature. 423
Louis VR, Russek-Cohen E, Choopun N, Rivera ING, Gangle B, Jiang SC, Rubin A, Patz JA, Huq A, Colwell RR.  2003.  Predictability of Vibrio Cholerae in Chesapeake Bay. Applied and Environmental MicrobiologyAppl. Environ. Microbiol.Applied and Environmental MicrobiologyAppl. Environ. Microbiol.. 69
2004
El‐Sayed NM, Bartholomeu D, Ivens A, Johnston DA, LoVerde PT.  2004.  Advances in schistosome genomics. Trends in ParasitologyTrends in Parasitology. 20
Moran MAnn, Buchan A, González JM, Heidelberg JF, Whitman WB, Kiene RP, Henriksen JR, King GM, Belas R, Fuqua C et al..  2004.  Genome sequence of Silicibacter pomeroyi reveals adaptations to the marine environment. NatureNature. 432
Binsztein N, Costagliola MC, Pichel M, Jurquiza V, Ramírez FC, Akselman R, Vacchino M, Huq A, Colwell RR.  2004.  Viable but Nonculturable Vibrio Cholerae O1 in the Aquatic Environment of Argentina. Applied and Environmental MicrobiologyAppl. Environ. Microbiol.Applied and Environmental MicrobiologyAppl. Environ. Microbiol.. 70
2005
Tettelin H, Masignani V, Cieslewicz MJ, Donati C, Medini D, Ward NL, Angiuoli SV, Crabtree J, Jones AL, A. Durkin S et al..  2005.  Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae: implications for the microbial "pan-genome". Proceedings of the National Academy of Sciences of the United States of AmericaProceedings of the National Academy of Sciences of the United States of America. 102
Kim D, Chiurillo MAngel, El-Sayed N, Jones K, Santos MRM, Porcile PE, Andersson B, Myler P, da Silveira JFranco, Ramírez JLuis.  2005.  Telomere and subtelomere of Trypanosoma cruzi chromosomes are enriched in (pseudo)genes of retrotransposon hot spot and trans-sialidase-like gene families: the origins of T. cruzi telomeres.. Gene. 346:153-61.
Barry JD, Marcello L, Morrison LJ, Read AF, Lythgoe K, Jones N, Carrington M, Blandin G, Böhme U, Caler E et al..  2005.  What the genome sequence is revealing about trypanosome antigenic variation.. Biochem Soc Trans. 33(Pt 5):986-9.
Joardar V, Lindeberg M, Jackson RW, Selengut J., Dodson R, Brinkac LM, Daugherty SC, Deboy R, A. Durkin S, Giglio MGwinn et al..  2005.  Whole-genome sequence analysis of Pseudomonas syringae pv. phaseolicola 1448A reveals divergence among pathovars in genes involved in virulence and transposition. Journal of bacteriologyJournal of bacteriology. 187
Joardar V, Lindeberg M, Jackson RW, Selengut J., Dodson R, Brinkac LM, Daugherty SC, Deboy R, A. Durkin S, Giglio MGwinn et al..  2005.  Whole-genome sequence analysis of Pseudomonas syringae pv. phaseolicola 1448A reveals divergence among pathovars in genes involved in virulence and transposition. Journal of bacteriologyJournal of bacteriology. 187
2006
Wang L.S, Jensen S., Hannenhalli S.  2006.  An interaction-dependent model for transcription factor binding. Systems Biology and Regulatory GenomicsSystems Biology and Regulatory Genomics.
2007
Hammel M, Sfyroera G, Pyrpassopoulos S, Ricklin D, Ramyar KX, Pop M., Jin Z, Lambris JD, Geisbrecht BV.  2007.  Characterization of Ehp, a Secreted Complement Inhibitory Protein from Staphylococcus aureus. Journal of Biological ChemistryJournal of Biological Chemistry. 282
Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN et al..  2007.  Evolution of genes and genomes on the Drosophila phylogeny. NatureNature. 450
Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN et al..  2007.  Evolution of genes and genomes on the Drosophila phylogeny. NatureNature. 450
Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN et al..  2007.  Evolution of genes and genomes on the Drosophila phylogeny. NatureNature. 450

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