On-SOMA
Scaffolding using Optical Map Alignment


The beta version of the package and its source code can be downloaded from here (255 KB tarball)

Reference

If you find this package useful in your work, please cite the following paper:

Niranjan Nagarajan, Timothy D. Read and Mihai Pop. Scaffolding and validation of bacterial genome assemblies using optical restriction maps. Bioinformatics (2008)

Acknowledgements

This project is supported by Department of Defense Transformational Medical Technologies initiative IB06RS002.

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Last updated: Mar. 28, 2008