Research Publications

Pages

2016
Mendelowitz LM, Schwartz DC, Pop M. 2016. Maligner: a fast ordered restriction map aligner.. Bioinformatics. 32(7):1016-22. PubMed DOI Google Scholar BibTeX EndNote XML RIS
Ondov BD, Treangen T, Melsted áll, Mallonee AB, Bergman NH, Koren S, Phillippy AM. 2016. Mash: fast genome and metagenome distance estimation using MinHash. Genome Biology. (1Suppl 19) DOI Google Scholar BibTeX EndNote XML RIS
Shaked I, Oberhardt A., Atias N, Sharan R, Ruppin E. 2016. Metabolic Network Prediction of Drug Side Effects. Cell Systems. 2(3):209-213. DOI Google Scholar BibTeX EndNote XML RIS
Ghurye JS, Cepeda-Espinoza V, Pop M. 2016. Metagenomic Assembly: Overview, Challenges and Applications. Yale J Biol Med. 89(3) Google Scholar BibTeX EndNote XML RIS
Dorri F, Mendelowitz L, Bravo éctorCorrada. 2016. methylFlow: cell-specific methylation pattern reconstruction from high-throughput bisulfite-converted DNA sequencing. Bioinformatics. 32(11):1618-1624. DOI Google Scholar BibTeX EndNote XML RIS
Persi E, Wolf YI, Koonin EV. 2016. Positive and strongly relaxed purifying selection drive the evolution of repeats in proteins. Nature Communications. 7:13570. DOI Google Scholar BibTeX EndNote XML RIS
Wagner J, Paulson JN, Wang X, Bhattacharjee B, Bravo éctorCorrada. 2016. Privacy-Preserving Microbiome Analysis Using Secure Computation. Bioinformatics. :btw073. DOI Google Scholar BibTeX EndNote XML RIS
Ghurye J, Pop M, Koren S, Chin C-S. 2016. Scaffolding of long read assemblies using long range contact information. DOI Google Scholar BibTeX EndNote XML RIS
Pozniak Y, Balint-Lahat N, Rudolph JDaniel, Lindskog C, Katzir R, Avivi C, Pontén F, Ruppin E, Barshack I, Geiger T. 2016. System-wide Clinical Proteomics of Breast Cancer Reveals Global Remodeling of Tissue Homeostasis.. Cell Syst. 2(3):172-84. PubMed DOI Google Scholar BibTeX EndNote XML RIS
Oberhardt MA, Zarecki R, Reshef L, Xia F, Duran-Frigola M, Schreiber R, Henry CS, Ben-Tal N, Dwyer DJ, Gophna U et al.. 2016. Systems-Wide Prediction of Enzyme Promiscuity Reveals a New Underground Alternative Route for Pyridoxal 5'-Phosphate Production in E. coli.. PLoS Comput Biol. 12(1):e1004705. PubMed DOI Google Scholar BibTeX EndNote XML RIS
Valdes KM, Sundar GS, Vega LA, Belew AT, Islam E, Binet R, El-Sayed NM, Le Breton Y, McIver KS. 2016. The fruRBA Operon Is Necessary for Group A Streptococcal Growth in Fructose and for Resistance to Neutrophil Killing during Growth in Whole Human Blood. Infection and Immunity. 84(4):1016-1031. DOI Google Scholar BibTeX EndNote XML RIS
Valdes KM, Sundar GS, Vega LA, Belew AT, Islam E, Binet R, El-Sayed NM, Le Breton Y, McIver KS. 2016. The fruRBA operon is necessary for Group A Streptococcal growth in fructose and for resistance to neutrophil killing during growth in whole human blood.. Infect Immun. PubMed DOI Google Scholar BibTeX EndNote XML RIS
Mokryn O, Wagner A, Blattner M, Ruppin E, Shavitt Y. 2016. The Role of Temporal Trends in Growing Networks.. PLoS One. 11(8):e0156505. PubMed DOI Google Scholar BibTeX EndNote XML RIS
Cunningham CE, Li S, Vizeacoumar FS, Bhanumathy KKalyanasun, Lee JSang, Parameswaran S, Furber L, Abuhussein O, Paul JM, McDonald M et al.. 2016. Therapeutic relevance of the protein phosphatase 2A in cancer. Oncotarget.com. DOI Google Scholar BibTeX EndNote XML RIS
Li Y, Shah-Simpson S, Okrah K, A Belew T, Choi J, Caradonna KL, Padmanabhan P, Ndegwa DM, M Temanni R, Bravo HCorrada et al.. 2016. Transcriptome Remodeling in Trypanosoma cruzi and Human Cells during Intracellular Infection.. PLoS Pathog. 12(4):e1005511. PubMed DOI Google Scholar BibTeX EndNote XML RIS

2015
Regier JC, Mitter C, KRISTENSEN NIELSP, Davis DR, VAN NIEUKERKEN ERIKJ, ROTA JADRANKA, Simonsen TJ, Mitter KT, Kawahara AY, Yen S-H et al.. 2015. A molecular phylogeny for the oldest (nonditrysian) lineages of extant Lepidoptera, with implications for classification, comparative morphology and life-history evolution. Systematic Entomology. :n/a-n/a. DOI Google Scholar BibTeX EndNote XML RIS
Pop M, Touzet H. 2015. Algorithms in Bioinformatics: 15th International Workshop, WABI 2015. Lecture Notes in Bioinformatics. :328. Google Scholar BibTeX EndNote XML RIS
Das A, Morley M, Moravec CS, Tang W.HW, Hakonarson H, Ashley EA, Brandimarto J, Hu R, Li M, Li H et al.. 2015. Bayesian integration of genetics and epigenetics detects causal regulatory SNPs underlying expression variability. Nature Communications. 6:8555. DOI Google Scholar BibTeX EndNote XML RIS
Wang K, Cao K, Hannenhalli S. 2015. Chromatin and genomic determinants of alternative splicing. BCB '15 Proceedings of the 6th ACM Conference on Bioinformatics, Computational Biology and Health Informatics . Google Scholar BibTeX EndNote XML RIS
Pop M. 2015. Computational challenges in microbiome research. 2015 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)2015 IEEE International Conference on Bioinformatics and Biomedicine (BIBM). DOI Google Scholar BibTeX EndNote XML RIS

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