Research Publications

Pages

2007
Mount SM, Gotea V, Lin C-F, Hernandez K, Makalowski W. 2007. Spliceosomal small nuclear RNA genes in 11 insect genomes.. RNA. 13(1):5-14. PubMed DOI Google Scholar BibTeX EndNote XML RIS
Dogan R.I, Getoor L, Wilbur W.J, Mount SM. 2007. SplicePort--An interactive splice-site analysis tool. Nucleic Acids ResearchNucleic Acids Research. 35 Google Scholar BibTeX EndNote XML RIS
Dogan RIslamaj, Getoor L, W Wilbur J, Mount SM. 2007. SplicePort--an interactive splice-site analysis tool.. Nucleic Acids Res. 35(Web Server issue):W285-91. PubMed DOI Google Scholar BibTeX EndNote XML RIS
Stelter K, El‐Sayed NM, Seeber F. 2007. The Expression of a Plant-type Ferredoxin Redox System provides Molecular Evidence for a Plastid in the Early Dinoflagellate Perkinsus marinus. ProtistProtist. 158 Google Scholar BibTeX EndNote XML RIS
Selengut J., Haft DH, Davidsen T, Ganapathy A, Gwinn-Giglio M, Nelson WC, R. Richter A, White O. 2007. TIGRFAMs and Genome Properties: tools for the assignment of molecular function and biological process in prokaryotic genomes. Nucleic acids researchNucleic Acids Research. 35 Google Scholar BibTeX EndNote XML RIS
Singh L.N, Wang L.S, Hannenhalli S. 2007. TREMOR—a tool for retrieving transcriptional modules by incorporating motif covariance. Nucleic acids researchNucleic Acids Research. 35 Google Scholar BibTeX EndNote XML RIS
Chaiyanan S, Chaiyanan S, Grim C, Maugel T, Huq A, Colwell RR. 2007. Ultrastructure of coccoid viable but non‐culturable Vibrio cholerae. Environmental MicrobiologyEnvironmental Microbiology. 9 Google Scholar BibTeX EndNote XML RIS
Minkah N, Hwang Y, Perry K, Van Duyne GD, Hendrickson R, Lefkowitz EJ, Hannenhalli S, Bushman FD. 2007. Variola virus topoisomerase: DNA cleavage specificity and distribution of sites in Poxvirus genomes. VirologyVirology. 365 Google Scholar BibTeX EndNote XML RIS
Alam M., Sultana M., Nair G.B, Siddique A.K, Hasan N.A, Sack R.B, Sack D.A, Ahmed K.U, Sadique A., Watanabe H. et al.. 2007. Viable but nonculturable Vibrio cholerae O1 in biofilms in the aquatic environment and their role in cholera transmission. Proceedings of the National Academy of SciencesProceedings of the National Academy of Sciences. 104 Google Scholar BibTeX EndNote XML RIS

2006
Kingsford C, Zaslavsky E., Singh M.. 2006. A compact mathematical programming formulation for DNA motif finding. Combinatorial Pattern Matching. Google Scholar BibTeX EndNote XML RIS
Wang J, Hannenhalli S. 2006. A mammalian promoter model links cis elements to genetic networks. Biochemical and Biophysical Research CommunicationsBiochemical and Biophysical Research Communications. 347 Google Scholar BibTeX EndNote XML RIS
Wang L.S, Jensen S., Hannenhalli S. 2006. An interaction-dependent model for transcription factor binding. Systems Biology and Regulatory GenomicsSystems Biology and Regulatory Genomics. Google Scholar BibTeX EndNote XML RIS
Geisbrecht BV, Bouyain S, Pop M.. 2006. An optimized system for expression and purification of secreted bacterial proteins. Protein Expression and PurificationProtein Expression and Purification. 46 Google Scholar BibTeX EndNote XML RIS
Attardo GM, Strickler-Dinglasan P, Perkin SAH, Caler E, Bonaldo MF, Soares MB, El-Sayeed N, Aksoy S. 2006. Analysis of fat body transcriptome from the adult tsetse fly, Glossina morsitans morsitans.. Insect Mol Biol. 15(4):411-24. PubMed DOI Google Scholar BibTeX EndNote XML RIS
Badger JH, Hoover TR, Brun YV, Weiner RM, Laub MT, Alexandre G, Mrázek J, Ren Q, Paulsen IT, Nelson KE et al.. 2006. Comparative genomic evidence for a close relationship between the dimorphic prosthecate bacteria Hyphomonas neptunium and Caulobacter crescentus. Journal of bacteriologyJournal of bacteriology. 188 Google Scholar BibTeX EndNote XML RIS
Hotopp JCDunning, Lin M, Madupu R, Crabtree J, Angiuoli SV, Eisen JA, Eisen J, Seshadri R, Ren Q, Wu M et al.. 2006. Comparative genomics of emerging human ehrlichiosis agents. PLoS geneticsPLoS genetics. 2 Google Scholar BibTeX EndNote XML RIS
Campbell MA, Haas BJ, Hamilton JP, Mount SM, C Buell R. 2006. Comprehensive analysis of alternative splicing in rice and comparative analyses with Arabidopsis.. BMC Genomics. 7:327. PubMed DOI Google Scholar BibTeX EndNote XML RIS
Evans P, Donahue G, Hannenhalli S. 2006. Conservation Patterns in cis-Elements Reveal Compensatory Mutations. Comparative GenomicsComparative Genomics. 4205 Google Scholar BibTeX EndNote XML RIS
Everett L, San Wang L-, Hannenhalli S. 2006. Dense Subgraph Computation Via Stochastic Search: Application to Detect Transcriptional Modules. BioinformaticsBioinformaticsBioinformaticsBioinformatics. 22 Google Scholar BibTeX EndNote XML RIS
Huq A, Grim C, Colwell RR, G. Nair B. 2006. Detection, Isolation, and Identification of Vibrio cholerae from the Environment. Current Protocols in MicrobiologyCurrent Protocols in Microbiology. Google Scholar BibTeX EndNote XML RIS

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