Software pipeline for GEMS diarrheal disease study

Our study (linked below) was initiated before the emergence of software pipelines for 16S rRNA analysis. The analytical pipeline used in our project is provided here to enable reproducibility and in hopes that it would be useful as an education tool or for people who want to develop their own pipeline. Users (particularly novice ones) who simply want a dataset analyzed should instead use Qiime or Mothur.

UMIACS Investigators: