CBCB - Quick Reference

People
Mailing Lists
Phone Numbers

Umiacs Servers
CBCB Servers
CBCB Workstations
CBCB Condor Nodes
CBCB Mounts

Web Publishing
Web Links

Panda Databases

Software Locations
Shell Variables
Offsite Shell Variables
Dot Files

People

Name	Number	Room	email	machine
Angiuoli, Sam	57444	3120A BS	angiuoli [at] umiacs.umd.edu	elm
Ayanbule, Kunmi	57269	3120E BS	ayanbule [at] umiacs.umd.edu	mahogany
Bazinet, Adam	57408	3122 BS	pknut777 [at] umiacs.umd.edu	leucine
Brady, Arthur	58772	3104D	abrady [at] umiacs.umd.edu	sumac
Brinkley, Norma	55142	3101 BS	nbrinkle [at] umiacs.umd.edu
Castillo-Davis, Cristian	52005	3104D BS	castill0 [at] umd.edu
Colwell, Rita	59550	3103 BS	rcolwell [at] umiacs.umd.edu
Cross, Denise	55936	3120D BS	dcross [at] umiacs.umd.edu	maple
Cummings, Mike	59903	3123 BS	mike [at] umiacs.umd.edu	methionine
Delcher, Art	59468	3107 BS	adelcher [at] umiacs.umd.edu	pine
De Magny, Guillaume	53235	3104H BS	magny [at] umiacs.umd.edu	buschw
Edwards, Nathan	59901	3119 BS	nedwards [at] umiacs.umd.edu
El-Sayed, Najib	55960	3115 BS	elsayed [at] .umd.edu	cyprus
Grimm, Christopher	53235	3104H BS	grimcj [at] umd.edu
Kelley, David	57169	3120G BS	dakelley [at] umiacs.umd.edu	hackberry
Kingsford, Carl	57395	3120B BS	carlk [at] umiacs.umd.edu	dogwood
Mount, Steve	59904	3117 BS	smount [at] umd.edu
Newlin, Jennifer	59905/51222	3115/2119	jnewlin [at] umiacs.umd.edu
Pertea, Ela	59762	3109 BS	mpertea [at] umiacs.umd.edu	cedar
Pertea, Geo	59782	3120E BS	gpertea [at] umiacs.umd.edu	evergreen
Phillippy, Adam	57169	3120G BS	amp [at] umiacs.umd.edu	aspen
Pop, Mihai	57245	3120F BS	mpop [at] umiacs.umd.edu	hickory
Puiu, Daniela	53403	3120B BS	dpuiu [at] umiacs.umd.edu	sweetgum
Roberts, Mike	57444	3120A BS	tri [at] umiacs.umd.edu	chestnut
Salzberg, Steven	59611	3125 BS	salzberg [at] umiacs.umd.edu	poplar
Schatz, Mike	57169	3120G BS	mschatz [at] umiacs.umd.edu	fir
Sharara, Hossam	57444	3120A BS	hossam [at] umiacs.umd.edu	yucca
Sommer, Dan	57384	3120B BS	dsommer [at] umiacs.umd.edu	birch
Trapnell, Cole	57169	3120G BS	cole [at] umiacs.umd.edu	redbay
White, James	57444	3120A BS	whitej [at] umiacs.umd.edu	acacia

Return to Top

Mailing Lists

All CBCB	cbcb-staff [at] umiacs.umd.edu
Assembly Group	ifx [at] umiacs.umd.edu

Return to Top

Phone Numbers

Fax	301-314-1341
Voice Mail	x55200
Telecommunications & Voice Mail	x54400
Facilities (broken lights, flood)	x52222
Room Temperature	x53244

Return to Top

Umiacs Servers
Please refer to the UMIACS wiki for an updated list.
Return to Top

CBCB Servers
Please refer to the CBCB-private wiki for an updated list.
Return to Top

CBCB Printers

ps296-3120a	3120A	Xerox Phaser 4500DX
cps296-3120H	Printer Room	Xerox Workcenter 35
cps296-3120Hb	Printer Room	Color HP Laserjet 4600N

CBCB Condor Nodes
Please refer to the CBCB-private wiki for an updated list.
Return to Top

CBCB Mounts
Please refer to the CBCB-private wiki for an updated list.
Return to Top

Web Publishing

http://www.cbcb.umd.edu/~username	/fs/www/users/username
http://www.umiacs.umd.edu/~username	/fs/www/users/username
http://www.cbcb.umd.edu/	/fs/www-cbcb/html (from kiwi)
/fs/www-cbcb/htdocs/template/stub.shtml	Current Template

Return to Top

Web Links

exchange mail	https://franklin.pc.umiacs.umd.edu/exchange
imap mail	http://webmail.umiacs.umd.edu/
intranet	https://intranet.umiacs.umd.edu
wireless	http://noc.net.umd.edu/MAM.html
vpn	https://intranet.umiacs.umd.edu/intranetfaq/index.jsp?id=169
IT Help	staff@umiacs.umd.edu
Safari	safari.oreilly.com
Recent WGA CVS	http://www.cbcb.umd.edu/~mschatz/cvs.shtml
Recent CA CVS	http://www.cbcb.umd.edu/~mschatz/ca.shtml
UMD Helpdesk	http://www.helpdesk.umd.edu
Printing Guide	https://wiki.umiacs.umd.edu/umiacs/index.php/Printing
Unix Account Registration	https://intranet.umiacs.umd.edu/intranet/accountRequest/form.htm
UMIACS Main Wiki/Announcements	https://wiki.umiacs.umd.edu/umiacs/index.php/Main_Page

Return to Top

Panda Databases (/fs/sz/data/panda)

AllGroup (everything)

BacterialGroup

c_elegans

EukGroup

FungalGroup

h_sapiens

MammalGroup

NoTrypLeishGroup

ParasiticGroup

PlantGroup

ViralGroup

Return to Top

Software Locations

Platform independent Binaries	/fs/sz-user-supported/common/bin
Linux i686 Binaries	/fs/sz-user-supported/Linux-i686/bin
Linux x86_64 (Opteron)	/fs/sz-user-supported/Linux-x86_64/bin
Common Files (Not executable)	/fs/sz-user-supported/share
UMIACS Maintained Packages	/opt/stow
UMIACS Maintainted Compiled Packages	/usr/local/stow

Return to Top

Shell Variables

CVSROOT	/fs/szdevel/src/cvsroot
PATH	/fs/sz-user-supported/`uname`-`uname -m`/bin:/fs/sz-user-supported/common/bin:${PATH}
LD_LIBRARY_PATH	/fs/sz-user-supported/`uname`-`uname -m`/lib
PERLLIB	/fs/sz-user-supported/`uname`-`uname -m`/lib:/fs/sz-user-supported/common/lib

Return to Top

Offsite Shell Variables (for accessing CVS from a non-UMIACS computer)

CVSROOT	:ext:username@bayberry.umiacs.umd.edu:/fs/szdevel/src/cvsroot
CVS_RSH	ssh

Return to Top

AMOS CVS commands

CVS_RSH	export CVS_RSH=ssh
Checkout (Project member)	cvs -z3 -d:ext:username@amos.cvs.sourceforge.net:/cvsroot/amos co -P AMOS
Checkout (Anonymous)	cvs -z3 -d:pserver:anonymous@amos.cvs.sourceforge.net:/cvsroot/amos co -P AMOS
CVS Documentation	http://sourceforge.net/cvs/?group_id=134326

Return to Top

Dot Files
It is recommended you include the predefined dotfiles

bash:
. /fs/sz-user-supported/share/dotfiles/bashrc.cbcb

tcsh:
source /fs/sz-user-supported/share/dotfiles/tcshrc.cbcb

#-- bashrc start
export PATH=/fs/sz-user-supported/common/bin:$PATH
export PATH=/fs/sz-user-supported/`uname`-`uname -m`/bin:$PATH
export PATH=/fs/wrenhomes/amp/bin:$PATH

export PERLLIB=/fs/sz-user-supported/common/lib:$PERLLIB
export PERLLIB=/fs/sz-user-supported/`uname`-`uname -m`/lib:$PERLLIB

export LD_LIBRARY_PATH=/fs/sz-user-supported/`uname`-`uname -m`/lib:$LD_LIBRARY_PATH

export CVSROOT=/fs/szdevel/src/cvsroot
export BLASTMAT=/fs/sz-user-supported/Linux-i686/packages/wu-blast/matrix

#For SYBASE
export SYBASE=/opt/sybase-client
export SYBASE_OCS=${SYBASE}/OCS-12_5
export PATH=${SYBASE_OCS}/bin:$PATH
export LD_LIBRARY_PATH=${SYBASE}/OCS-12_5/lib:$LD_LIBRARY_PATH
export DSQUERY=SYBASESRV
export PERLLIB=${PERLLIB}:/opt/sybase-client/perl/lib/perl5/site_perl/5.8.0/i386-linux-thread-multi
#-- bashrc end

#-- cshrc start
if (! $?PATH) setenv PATH
if (! $?PERLLIB) setenv PERLLIB
if (! $?LD_LIBRARY_PATH) setenv LD_LIBRARY_PATH

setenv PATH /fs/sz-user-supported/common/bin:$PATH
setenv PATH /fs/sz-user-supported/`uname`-`uname -m`/bin:$PATH
setenv PATH /fs/wrenhomes/amp/bin:$PATH

setenv PERLLIB /fs/sz-user-supported/common/lib:$PERLLIB
setenv PERLLIB /fs/sz-user-supported/`uname`-`uname -m`/lib:$PERLLIB

setenv LD_LIBRARY_PATH /fs/sz-user-supported/`uname`-`uname -m`/lib:$LD_LIBRARY_PATH

setenv CVSROOT /fs/szdevel/src/cvsroot

setenv BLASTMAT /fs/sz-user-supported/Linux-i686/packages/wu-blast/matrix
## For SYBASE
setenv SYBASE /opt/sybase-client
setenv SYBASE_OCS $SYBASE/OCS-12_5
setenv PATH $SYBASE_OCS/bin:$PATH
setenv LD_LIBRARY_PATH $SYBASE/OCS-12_5/lib:$LD_LIBRARY_PATH
setenv DSQUERY SYBASESRV

setenv PERLLIB ${PERLLIB}:/opt/sybase-client/perl/lib/perl5/site_perl/5.8.0/i386-linux-thread-multi
#-- cshrc end

Return to Top