TEST CBCB - Quick Reference
People
Mailing Lists
Phone Numbers
Umiacs Servers
CBCB Servers
CBCB Workstations
CBCB Condor Nodes
CBCB Mounts
Web Publishing
Web Links
Panda Databases
Software Locations
Shell Variables
Offsite Shell Variables
Dot Files
People
|
Name
|
Number
|
Room
|
email
|
machine
|
|
Allen, Jonathan
|
57444
|
3120A BS
|
jeallen [at] umiacs.umd.edu
|
yucca
|
|
Angiuoli,
Sam
|
57444
|
3120A BS
|
angiuoli [at] umiacs.umd.edu
|
elm
|
|
Ayanbule,
Kunmi
|
57269
|
3120E BS
|
ayanbule [at] umiacs.umd.edu
|
mahogany
|
|
Bazinet,
Adam
|
57408
|
3122 BS
|
pknut777 [at] umiacs.umd.edu
|
|
|
Brinkley,
Norma
|
55142
|
3101 BS
|
nbrinkle [at] umiacs.umd.edu
|
|
|
Choi, Byoung-Hee
|
57405
|
3122 BS
|
|
|
|
Colwell,
Rita
|
59550
|
3103 BS
|
rcolwell [at] umiacs.umd.edu
|
|
|
Cross, Denise
|
55936
|
3120D BS
|
dcross [at] umiacs.umd.edu
|
maple
|
|
Cummings,
Mike
|
59903
|
3125 BS
|
mike [at] umiacs.umd.edu
|
|
|
Delcher,
Art
|
59468
|
3107 BS
|
adelcher [at] umiacs.umd.edu
|
pine
|
|
Edwards,
Nathan
|
59901
|
3119 BS
|
nedwards [at] umiacs.umd.edu
|
|
|
Kingsford,
Carl
|
57395
|
3120B BS
|
carlk [at] umiacs.umd.edu
|
dogwood
|
|
Kitchen Fax
|
301.314.1341
|
3116 BS
|
|
|
|
Mount, Steve
|
59904
|
3117 BS
|
smount [at] umd.edu
|
|
|
Newlin,
Jennifer
|
59905/51222
|
3115/2119
|
jnewlin [at] umiacs.umd.edu
|
|
|
Pertea, Ela
|
59762
|
3109 BS
|
mpertea [at] umiacs.umd.edu
|
cedar
|
|
Pertea, Geo
|
|
BS
|
gpertea [at] umiacs.umd.edu
|
|
|
Phillippy, Adam
|
57169
|
3120G BS
|
amp [at] umiacs.umd.edu
|
aspen
|
|
Pop, Mihai
|
57245
|
3120F BS
|
mpop [at] umiacs.umd.edu
|
hickory
|
|
Roberts, Mike
|
57444
|
3120A BS
|
tri [at] umiacs.umd.edu
|
chestnut
|
|
Salzberg,
Steven
|
59611
|
3125 BS
|
salzberg [at] umiacs.umd.edu
|
poplar
|
|
Schatz, Mike
|
57169
|
3120G BS
|
mschatz [at] umiacs.umd.edu
|
fir
|
|
Sommer, Dan
|
57384
|
3120B BS
|
dsommer [at] umiacs.umd.edu
|
birch
|
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Mailing Lists
|
All CBCB
|
cbcb-staff [at] umiacs.umd.edu
|
|
Assembly Group
|
ifx [at] umiacs.umd.edu
|
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Phone Numbers
|
Voice Mail
|
x55200
|
|
Telecommunications & Voice Mail
|
x54400
|
|
Facilities (broken lights, flood)
|
x52222
|
|
Room Temperature
|
x53244
|
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Umiacs Servers
|
e-access.umiacs.umd.edu
|
Mail forwarding
|
|
kiwi.umiacs.umd.edu
|
Linux
|
|
strawberry.umiacs.umd.edu
|
Linux
|
|
raysrv3.umiacs.umd.edu
|
Solaris
|
|
fenris.cfar.umd.edu
|
Solaris
|
|
mellum.cfar.umd.edu
|
Solaris
|
|
odin.cfar.umd.edu
|
Solaris
|
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CBCB Servers (umiacs.umd.edu
cbcb.umd.edu)
|
magnolia
|
Software Development
|
iMac G4
|
3120G
|
|
|
|
bayberry
|
Computation
|
Altus
1300 Server
|
2x Opteron 200
|
8 GB
|
RHAS3
|
|
beech
|
Computation
|
Altus
1300 Server
|
2x Opteron 200
|
8 GB
|
RHAS4
|
|
hemlock
|
Computation
|
Altus
1300 Server
|
2x Opteron 200
|
8 GB
|
RHAS3
|
|
torreya
|
Computation
|
Altus
1300 Server
|
2x Opteron 200
|
8 GB
|
RHAS3
|
|
larch
|
Computation
|
Altus
3400 Server
|
4x Opteron 850
|
32 GB
|
RHAS3
|
|
privet
|
Computation
|
Altus
3400 Server
|
4x Opteron 850
|
32 GB
|
RHAS4
|
|
sycamore
|
Computation
|
Altus
3400 Server
|
4x Opteron 850
|
32 GB
|
RHAS4
|
|
swift
|
Fileserver
|
SunFire V240
|
2x1.5 GHz Ultra SPARC IIIi
|
3 GB
|
Solaris 8
|
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CBCB Workstations (RHEL3
RHEL4 Mac
Windows)
|
Name
|
Location
|
Model
|
OS
|
Processor
|
RAM
|
Hard Drive
|
User
|
|
sweetgum
|
3104G Biomolecular Sciences Bldg
|
Dell Precision 670
|
RHEL4
|
2x 3.0 GHz Intel Xeon
|
2 GB
|
73 GB U320 10K
|
Daniela Puiu
|
|
pine
|
3105 Biomolecular Sciences Bldg
|
Dell Precision 470
|
RHEL3
|
2x 3.0 GHz Intel Xeon
|
2 GB
|
73 GB U320 10K
|
Art Delcher
|
|
cedar
|
3107 Biomolecular Sciences Bldg
|
Dell Precision 470
|
RHEL3
|
2x 3.0 GHz Intel Xeon
|
2 GB
|
73 GB U320 10K
|
Ela Pertea
|
|
cyprus
|
3115 Biomolecular Sciences Bldg
|
Dell Precision 470
|
RHEL3
|
2x 3.0 GHz Intel Xeon
|
2 GB
|
73 GB U320 10K
|
Najib El-Sayed
|
|
oak
|
3125 Biomolecular Sciences Bldg
|
PowerMac G5
|
Mac 10.4.6
|
2x 2.0 GHz PowerPC G5
|
2 GB
|
150 GB SATA
|
Steven Salzberg
|
|
poplar
|
3125 Biomolecular Sciences Bldg
|
Dell Precision 470
|
RHEL3
|
2x 3.0 GHz Intel Xeon
|
2 GB
|
73 GB U320 10K
|
Steven Salzberg
|
|
alder
|
3120A Biomolecular Sciences Bldg
|
Dell Precision 470
|
RHEL3
|
2x 3.0 GHz Intel Xeon
|
2 GB
|
73 GB U320 10K
|
CBCB student
|
|
elm
|
3120A Biomolecular Sciences Bldg
|
Dell Precision 470
|
RHEL3
|
2x 3.0 GHz Intel Xeon
|
2 GB
|
73 GB U320 10K
|
Sam Anguioli
|
|
chestnut
|
3120A Biomolecular Sciences Bldg
|
Dell Precision 470
|
RHEL3
|
2x 3.0 GHz Intel Xeon
|
2 GB
|
73 GB U320 10K
|
Mike Roberts
|
|
yucca
|
3120A Biomolecular Sciences Bldg
|
Dell Precision 470
|
RHEL3
|
2x 3.0 GHz Intel Xeon
|
2 GB
|
73 GB U320 10K
|
Christopher Michael Hill
|
|
acacia
|
3120A Biomolecular Sciences Bldg
|
Dell Precision 670
|
RHEL4
|
2x 3.0 GHz Intel Xeon
|
2 GB
|
73 GB U320 10K
|
James White
|
|
basswood
|
3120A Biomolecular Sciences Bldg
|
Dell Precision 670
|
RHEL4
|
2x 3.0 GHz Intel Xeon
|
2 GB
|
73 GB U320 10K
|
Bo Liu
|
|
neofir
|
3120A Biomolecular Sciences Bldg
|
Dell Precision 690n
|
RHEL4
|
2x 3.0 GHz Intel Xeon
|
2 GB
|
80 GB
|
Mike Schatz
|
|
yew
|
3120A Biomolecular Sciences Bldg
|
Dell Precision 670
|
RHEL4
|
2x 3.0 GHz Intel Xeon
|
2 GB
|
73 GB U320 10K
|
Student
|
|
birch
|
3120B Biomolecular Sciences Bldg
|
Dell Precision 470
|
RHEL3
|
2x 3.0 GHz Intel Xeon
|
2 GB
|
73 GB U320 10K
|
Dan Sommers
|
|
dogwood
|
3120B Biomolecular Sciences Bldg
|
Dell Precision 470
|
RHEL3
|
2x 3.0 GHz Intel Xeon
|
2 GB
|
2x 73 GB U320 10K
|
Carl Kingsford
|
|
maple
|
3120D Biomolecular Sciences Bldg
|
iMac G5
|
Mac 10.4.6
|
2x 2.0 GHz PowerPC G5
|
1 GB
|
232.89 GB SATA
|
Denise Cross
|
|
redwood
|
3120D Biomolecular Sciences Bldg
|
Dell Optiplex GX280
|
WindowsXP
|
1x 3.8 GHz Pentium 4
|
512 GB
|
n/a
|
Denise Cross
|
|
evergreen
|
3120E Biomolecular Sciences Bldg
|
Dell Precision 470
|
RHEL3
|
2x 3.0 GHz Intel Xeon
|
2 GB
|
73 GB U320 10K
|
Geo Pertea
|
|
mahogany
|
3120E Biomolecular Sciences Bldg
|
Dell Precision 470
|
RHEL3
|
2x 3.0 GHz Intel Xeon
|
2 GB
|
73 GB U320 10K
|
Kunmi Ayanbule
|
|
hickory
|
3120F Biomolecular Sciences Bldg
|
Dell Precision 470
|
RHEL3
|
2x 3.0 GHz Intel Xeon
|
2 GB
|
73 GB U320 10K
|
Mihai Pop
|
|
aspen
|
3120G Biomolecular Sciences Bldg
|
Dell Precision 470
|
RHEL3
|
2x 3.0 GHz Intel Xeon
|
2 GB
|
73 GB U320 10K
|
Adam Phillippy
|
|
crabapple
|
3120G Biomolecular Sciences Bldg
|
Dell Precision 470
|
RHEL3
|
2x 3.0 GHz Intel Xeon
|
2 GB
|
73 GB U320 10K
|
Elaine Nsoesie
|
|
fir
|
3120G Biomolecular Sciences Bldg
|
Dell Precision 490
|
RHEL4
|
2x 3.0 GHz Intel Xeon
|
2 GB
|
73 GB U320 10K
|
Mike Schatz
|
|
magnolia
|
3120G Biomolecular Sciences Bldg
|
iMac G4
|
Mac 10.4.1
|
n/a
|
n/a
|
n/a
|
all
|
|
cottonwood
|
3120G Biomolecular Sciences Bldg
|
Dell Precision 670
|
RHEL4
|
2x 3.0 GHz Intel Xeon
|
2 GB
|
73 GB U320 10K
|
Nicholas Jacobs
|
|
hackberry
|
3120G Biomolecular Sciences Bldg
|
Dell Precision 670
|
RHEL4
|
2x 3.0 GHz Intel Xeon
|
2 GB
|
73 GB U320 10K
|
David Kelley
|
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CBCB Printers
|
ps296-3120a
|
3120A
|
Xerox Phaser 4500DX
|
|
cps296-3120H
|
Printer Room
|
Xerox Workcenter 35
|
|
cps296-3120Hb
|
Printer Room
|
Color HP Laserjet 4600N
|
CBCB Condor Nodes
|
flicker00 - flicker03
|
Submit nodes
|
|
wren00 - wren59
|
Worker nodes
|
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CBCB Mounts
|
/fs/szdevel
|
swift:/export/devel
|
150 GB
|
|
/fs/szscratch
|
swift:/export/scratch
|
39 GB
|
|
/fs/sztmpscratch
|
swift:/export/tmpscratch
|
887 GB
|
|
/fs/szasmg
|
swift:/export/work/asmg1
|
839 GB
|
|
/fs/szasmg2
|
swift:/export/work/asmg2
|
839 GB
|
|
/fs/szdata
|
swift:/export/work/data
|
700 GB
|
|
/fs/szgenefinding
|
swift:/export/work/genefinding
|
420 GB
|
|
/fs/szhsarpa
|
swift:/export/work/hsarpa
|
400 GB
|
|
/fs/sz-user-supported
|
swift:/export/software
|
20 GB
|
|
/fs/wrenhomes
|
swift:/export/wrenhomes
|
45 GB
|
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Web Publishing
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Web Links
Return
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Panda Databases (/fs/sz/data/panda)
|
AllGroup (everything)
|
|
BacterialGroup
|
|
c_elegans
|
|
EukGroup
|
|
FungalGroup
|
|
h_sapiens
|
|
MammalGroup
|
|
NoTrypLeishGroup
|
|
ParasiticGroup
|
|
PlantGroup
|
|
ViralGroup
|
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Software Locations
|
Platform independent Binaries
|
/fs/sz-user-supported/common/bin
|
|
Linux i686 Binaries
|
/fs/sz-user-supported/Linux-i686/bin
|
|
Linux x86_64 (Opteron)
|
/fs/sz-user-supported/Linux-x86_64/bin
|
|
Common Files (Not executable)
|
/fs/sz-user-supported/share
|
|
UMIACS Maintained Packages
|
/opt/stow
|
|
UMIACS Maintainted Compiled Packages
|
/usr/local/stow
|
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Shell Variables
|
CVSROOT
|
/fs/szdevel/src/cvsroot
|
|
PATH
|
/fs/sz-user-supported/`uname`-`uname
-m`/bin:/fs/sz-user-supported/common/bin:${PATH}
|
|
LD_LIBRARY_PATH
|
/fs/sz-user-supported/`uname`-`uname -m`/lib
|
|
PERLLIB
|
/fs/sz-user-supported/`uname`-`uname
-m`/lib:/fs/sz-user-supported/common/lib
|
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Offsite Shell Variables (for accessing CVS from a
non-UMIACS computer)
|
CVSROOT
|
:ext:username@bayberry.umiacs.umd.edu:/fs/szdevel/src/cvsroot
|
|
CVS_RSH
|
ssh
|
Return to Top
AMOS CVS commands
|
CVS_RSH
|
export CVS_RSH=ssh
|
|
Checkout (Project member)
|
cvs -z3
-d:ext:username@amos.cvs.sourceforge.net:/cvsroot/amos co -P AMOS
|
|
Checkout (Anonymous)
|
cvs -z3
-d:pserver:anonymous@amos.cvs.sourceforge.net:/cvsroot/amos co -P AMOS
|
|
CVS Documentation
|
http://sourceforge.net/cvs/?group_id=134326
|
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Dot Files
It is recommended you include the predefined dotfiles
bash:
. /fs/sz-user-supported/share/dotfiles/bashrc.cbcb
tcsh:
source /fs/sz-user-supported/share/dotfiles/tcshrc.cbcb
#-- bashrc start
export PATH=/fs/sz-user-supported/common/bin:$PATH
export PATH=/fs/sz-user-supported/`uname`-`uname -m`/bin:$PATH
export PATH=/fs/wrenhomes/amp/bin:$PATH
export PERLLIB=/fs/sz-user-supported/common/lib:$PERLLIB
export PERLLIB=/fs/sz-user-supported/`uname`-`uname -m`/lib:$PERLLIB
export LD_LIBRARY_PATH=/fs/sz-user-supported/`uname`-`uname
-m`/lib:$LD_LIBRARY_PATH
export CVSROOT=/fs/szdevel/src/cvsroot
export BLASTMAT=/fs/sz-user-supported/Linux-i686/packages/wu-blast/matrix
#For SYBASE
export SYBASE=/opt/sybase-client
export SYBASE_OCS=${SYBASE}/OCS-12_5
export PATH=${SYBASE_OCS}/bin:$PATH
export LD_LIBRARY_PATH=${SYBASE}/OCS-12_5/lib:$LD_LIBRARY_PATH
export DSQUERY=SYBASESRV
export PERLLIB=${PERLLIB}:/opt/sybase-client/perl/lib/perl5/site_perl/5.8.0/i386-linux-thread-multi
#-- bashrc end
#-- cshrc start
if (! $?PATH) setenv PATH
if (! $?PERLLIB) setenv PERLLIB
if (! $?LD_LIBRARY_PATH) setenv LD_LIBRARY_PATH
setenv PATH /fs/sz-user-supported/common/bin:$PATH
setenv PATH /fs/sz-user-supported/`uname`-`uname -m`/bin:$PATH
setenv PATH /fs/wrenhomes/amp/bin:$PATH
setenv PERLLIB /fs/sz-user-supported/common/lib:$PERLLIB
setenv PERLLIB /fs/sz-user-supported/`uname`-`uname -m`/lib:$PERLLIB
setenv LD_LIBRARY_PATH /fs/sz-user-supported/`uname`-`uname
-m`/lib:$LD_LIBRARY_PATH
setenv CVSROOT /fs/szdevel/src/cvsroot
setenv BLASTMAT /fs/sz-user-supported/Linux-i686/packages/wu-blast/matrix
## For SYBASE
setenv SYBASE /opt/sybase-client
setenv SYBASE_OCS $SYBASE/OCS-12_5
setenv PATH $SYBASE_OCS/bin:$PATH
setenv LD_LIBRARY_PATH $SYBASE/OCS-12_5/lib:$LD_LIBRARY_PATH
setenv DSQUERY SYBASESRV
setenv PERLLIB
${PERLLIB}:/opt/sybase-client/perl/lib/perl5/site_perl/5.8.0/i386-linux-thread-multi
#-- cshrc end
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